VMD-L Mailing List

From: Margaret Shun Cheung (mscheung_at_ipst.umd.edu)
Date: Tue Apr 04 2006 - 17:17:17 CDT

Dear VMD wizards,

I tried to generate psf from a pdb structure. It gave me warning messages
on N-, and C- residues when I run the script:

Warning: poorly guessed coordinate for atom HT1 ....
Warning: poorly guessed coordinate for atom HT2 ...
Warning: poorly guessed coordinate for atom HT3 ..
Warning: poorly guessed coordinate for atom OT1 ...
Warning: poorly guessed coordinate for atom OT2 ..

Can I ignore this warning? Thank you very much.
Sincerely,

Margaret S. Cheung,
Ph. D. Postdoctoral Fellow,

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