VMD-L Mailing List
From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Mar 17 2010 - 17:20:02 CDT
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On Wed, 2010-03-17 at 16:38 -0500, Thomas C. Bishop wrote:
hi tom,
> This brings up a more general question....
>
> Is it possible to redefine key works in VMD
> and if so how is this done?
some of the "keywords" are actually macros.
check out the output of: atomselect macro
others are hardcoded, so there it gets a bit
more tricky. if there are only a few pieces
missing, perhaps adding them via defining a
new macro (e.g. ambersidechain) might help.
> everything from sidechains etc...
>
> the reason I ask is that if I load an amber generated
> parmameters/topology
> file VMD can work with it but a number of the predefined key words do
> not
> functional fully correct. e.g.
>
> "nucleic" misses the default termination of DNA if I"m not mistaken.
is this with vmd-1.8.6 or vmd-1.8.7?
axel.
> TOm
>
>
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://sites.google.com/site/akohlmey/ Institute for Computational Molecular Science Temple University, Philadelphia PA, USA.
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