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From: lily jin (lily1907_at_yahoo.com)
Date: Thu Mar 15 2007 - 15:23:32 CDT
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Hi,
My protein was in a waterbox during simulation. I want to removed the waterbox when I analyze the results. I saved a dcd file without water. The atom number is 51353. Then I use AutoPSF plugin to generate a PSF file without water. However, the genrated PSF and PDB files include 51380 atoms. What makes the difference? What can I do to make them match? Thank you!
Lily
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