VMD-L Mailing List

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Wed Sep 19 2007 - 12:59:12 CDT

Thank you.

On 9/19/07, John Stone <johns_at_ks.uiuc.edu> wrote:
>
> Hi,
> You could also use this script from the VMD script library, but be
> careful about using it (or the 'avpos' measure command) on trajectories
> for periodic simulations.
>
> http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/trajectory_smooth/
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Sep 19, 2007 at 12:38:23PM -0400, Myunggi Yi wrote:
> > Dear vmd users,
> >
> > The trajectory smooting option effect only visualization
> > not on analysis or save trajectory.
> > Is there any easy way to save the smoothened (runing average) trajectory?
> >
> > or should I make a script using "avpos"?
> >
> >
> > --
> > Best wishes,
> >
> > MYUNGGI YI
> > ==================================
> > KLB 419
> > Institute of Molecular Biophysics
> > Florida State University
> > Tallahassee, FL 32306
> >
> > Office: (850) 645-1334
> > http://www.scs.fsu.edu/~myunggi
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> 

-- 
Best wishes,
MYUNGGI YI
==================================
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi