VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Sep 19 2007 - 11:57:16 CDT

Hi,
  You could also use this script from the VMD script library, but be
careful about using it (or the 'avpos' measure command) on trajectories
for periodic simulations.

http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/trajectory_smooth/

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Sep 19, 2007 at 12:38:23PM -0400, Myunggi Yi wrote:
> Dear vmd users,
>
> The trajectory smooting option effect only visualization
> not on analysis or save trajectory.
> Is there any easy way to save the smoothened (runing average) trajectory?
>
> or should I make a script using "avpos"?
>
>
> --
> Best wishes,
>
> MYUNGGI YI
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
> http://www.scs.fsu.edu/~myunggi 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
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Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
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