VMD-L Mailing List

From: Juan Antonio Raygoza Garay (raygozag_at_psu.edu)
Date: Thu Mar 21 2013 - 19:54:27 CDT

I just did and nothing happened to the secondary structure, just for curiosity i loaded ubiquitin and it showed the secondary structure so i'm guessing that it is something with the pdb (2WRN), has anyone seen this and solved it?

Thanks

On Mar 21, 2013, at 7:34 PM, Jack Bulat wrote:

> Hi Juan,
>
> Have you tried adjusting the Aspect Ratio or Thickness in the Graphical Representations menu box? Sometimes those default to the minimum, which makes the protein look coiled without showing ribbons.
>
> Hope that works,
> Jack Bulat
> Grad student,
> UC Berkeley
>
>
>
>
> On Mar 21, 2013, at 2:42 PM, Juan Antonio Raygoza Garay <raygozag_at_psu.edu> wrote:
>
>> Hi, i'm using VMD 1.9.1 on mac os and whenever I load any pdb with protein in it, it won't show the secondary structure of the protein in new cartoon, it only shows the proteins as coils, i already installed stride and restarted vmd but keeps showing me the same result.
>>
>> thanks
>>
>>
>>
>>
>