VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Fri Nov 25 2011 - 11:09:59 CST

Hi,

#load just the last 1000 frames and run
set sel [atomselect top protein]
measure avpos $sel

Regards,
Ajasja

On Fri, Nov 25, 2011 at 16:52, flavio seixas <oivalf_nix_at_yahoo.com> wrote:

> Hi,
>
> I have made a equilibration simulation of a protein system.
>
> Now I want to calculate an average structure from the lasts 1000 snapshots
> (last 1000 ps) of the equilibrated system.
>
> Does anyone know any script that can help me in this goal?
>
> I appreciate any help in this regard.
>
> Flavio
>
>
>