VMD-L Mailing List

From: ankit agrawal (aka895_at_gmail.com)
Date: Mon Sep 08 2014 - 11:52:42 CDT

Thanks!!! John

On Mon, Sep 8, 2014 at 8:33 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

> If these are all separate molecules, and not trajectory frames, then
> you could simply read them in as separate molecules, and VMD will
> display them all. A simple Tcl "foreach" loop operating on a list
> of files produced by "glob" should get this done easily, in combination
> with the VMD "mol new" command. If you're not familiar with basic Tcl yet,
> please read the Tcl tutorials at www.tcl.tk before proceeding any further.
>
> If you were loading these frames from a trajectory file, you would instead
> use the "draw multiple frames" feature shown in the "Trajectory" tab of
> the VMD graphical representations window.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
>
> On Mon, Sep 08, 2014 at 10:43:59AM +0530, ankit agrawal wrote:
> > Hi
> > I have generated a .gro file in GROMACS & separated it into 1000
> frames.
> > So i want to overlay (overlap) these .gro files in VMD. I can do this
> for
> > 5 or little more files but these are 1000 frames (each frame
> represents
> > each molecule file). Give me any script which can read these files and
> > overlay them.
> >
> > Thanks
> > Regards
> > Ankit Agrawal
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>