From: Joyce Tan (joyce.tankh_at_gmail.com)
Date: Fri Feb 11 2011 - 10:50:31 CST

Hi San,

When I load it, it shows that there is only one frame which I do find it
weird.
But I've tried splitting the file and it works. Thx

Joyce

On Sat, Feb 12, 2011 at 12:39 AM, santhu kumar <mesanthu_at_gmail.com> wrote:

> Hi
>
> VMD is showing both the molecules as different frames ..
> The simplest way to see them both at the same time is to split the
> multimodel PDB file into 2 different files ..
>
> Hope it helps,
> San
>
>
> On Fri, Feb 11, 2011 at 9:56 AM, Joyce Tan <joyce.tankh_at_gmail.com> wrote:
>
>> Hi,
>>
>> I've used g_confrms from gromacs to compare two structures with the
>> following command line -
>>
>> g_confrms -f1 1OMB.pdb -f2 md.gro -o fit.pdb
>>
>> fit.pdb is the output file which would show the 2 structures superimposed
>> on each other. But when I visualised it with vmd. I can only see one
>> structure.
>>
>> Any idea what's going on? I hereby attached part of the generated fit.pdb.
>>
>> All suggestions are welcomed.
>>
>> Regards,
>> Joyce
>>
>>
>>
>
>
>