VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Tue May 02 2006 - 13:00:10 CDT

Hi Abu,
can I ask why you have free oxygens floating around? If you want to make
them waters, the hydrogen addition will happen automatically when using
psfgen...

Best,
Peter

Naser, Md Abu wrote:

> Hi John,
>
> Is there anyway I can add some hydrogen atoms to free oxygens to make
> the system neutral using vmd?
>
> With regards,
>
> Abu Naser
> School Of Life Sciences
> Heriot-Watt University
> Edinburgh EH14 4AS
> Email: mn2_at_hw.ac.uk <mailto:mn2_at_hw.ac.uk>
> Phone: +44(0)1314518265
> Fax : +44(0) 131 451 3009
>