VMD-L Mailing List

From: Barry Isralewitz (barryi_at_ks.uiuc.edu)
Date: Mon Oct 08 2012 - 13:09:39 CDT

Hello Esam,

        You might also consider the Timeline plugin (Extensions:Analysis:Timeline) which can produce interactive 2D plots of this type. Use "Calculate:Display User Field" if you already have per-frame, per-residue data loaded in the user field.

Tutorial here:
http://www.ks.uiuc.edu/Training/Tutorials/science/timeline/tutorial_timeline.pdf

                Cheers,

                Barry

        
On Oct 8, 2012, at 12:57 PM, John Stone wrote:

> Hi,
> Have you read the help page for the heatmapper plugin:
> http://www.ks.uiuc.edu/Research/vmd/plugins/heatmapper/
>
> If you have questions that are not addressed in the heatmapper
> help page, I would recommend that you contact Anssi Nurminen,
> who has been the main developer of the tool.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Mon, Oct 08, 2012 at 12:53:04PM +0200, Esam Tolba wrote:
>> hi
>> Are there any tutorials for the Heat mapper of VMD 1.9.1? I would like to
>> use it in generating Heat map plots
>> Best Regards,
>> Esam
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078 

-- 
Barry Isralewitz
Theoretical and Computational Biophysics Group
3043 Beckman, University of Illinois at Urbana-Champaign
Office Phone: (217) 244-1612
email: barryi_at_ks.uiuc.edu   http://www.ks.uiuc.edu/~barryi