From: Ajasja Ljubetič (
Date: Tue Oct 28 2014 - 11:54:41 CDT


Perhaps the easiest way is to rightclick on the molecule
<>, click "save coordinates" and under selection
write "not water".
Or using TCL scripting create a not water selection and use the writepsf
and writepdb methods.
It's all extremely well documented.

Best regards,

On 28 October 2014 17:19, Asis Jana <> wrote:

> Dear VMD experts,
> I have a solvated box with a cylindrical nanotube. I wish to remove waters
> from inside the tube.Can you suggest to me how to do this?
> Thank you.
> Asis