From: Anton Arkhipov (
Date: Wed Oct 22 2008 - 10:28:02 CDT


The menu you are referring to, "Extract Bond/Angle Parameters of CG
Model from the All-Atom Simulation", is not included in the released
version of VMD yet. You can find it in the latest test version of VMD,
which you can download here:

If you have further questions, please let me know, and you can also
write to our developer, Kirby Vandivort (
), who wrote the GUI for shape-based CG tools.



On 22 Oct 2008, at 01:54, dongsheng lei wrote:

> Dear all
> I want to study a protein with Shape-based Coarse
> Graining(SBCG) simulation, but I can't find the menu "Extract Bond/
> Angle Parameters of CG Model from the All-Atom Simulation" in the
> cgtools plugin 0.1 which has been installed along with
> vmd186win32.msi. The cgtools plugin contains only 3 menu: "Residue-
> based Coarse Graining " "Shape-based Coarse Grainin" and "Reverse
> Previously RBCG Model Back To All-Atom".
> Any suggestion will be appreciated.
> Thank you!