VMD-L Mailing List
From: Norge Cruz Hernández (norge_at_us.es)
Date: Wed Apr 16 2014 - 13:24:26 CDT
- Next message: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Previous message: Josh Vermaas: "Re: How do i merge files with mergemols"
- Next in thread: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Reply: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Reply: Axel Kohlmeyer: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
I am new performing molecular dynamics simulations by using NAMD. I have
obtained the AMBER format files (molecule.top, molecule.pdb and
molecule.crd) by using link:
http://glycam.ccrc.uga.edu/ccrc/carbohydrates/cb_newbuilder.jsp?tool=crystallography&option=ff99:glycam06.
However, I would like to convert such files to the CHARMM format file
.psf and .crd or NAMD format file .psf and pdb. Please, could you like
to recommend me any software ... or script.. to convert (molecule.top
and molecule.crd) in AMBER format =to=> (molecule.psf and molecule.crd)
in CHARMM format or (molecule.psf and molecule.pdb) in NAMD format?
Thanks in advance !!!
-- Prof. Norge Cruz Hernández Dpto. Física Aplicada I Escuela Técnica Superior de Ingeniería Informática Universidad de Sevilla ave: Reina Mercedes, 41012 Sevilla, Spain Phone number: +34 - 954559970 Fax number: +34 - 954554341 http://www.personal.us.es/norge/
- Next message: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Previous message: Josh Vermaas: "Re: How do i merge files with mergemols"
- Next in thread: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Reply: Josh Vermaas: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Reply: Axel Kohlmeyer: "Re: convert AMBER format file to CHARMM format file or NAMD format file"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]