From: lam nguyen (lamvn08_at_gmail.com)
Date: Fri Oct 21 2011 - 17:06:35 CDT

Thanks,

I will try that.

Lam

On Thu, Oct 20, 2011 at 6:10 PM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:

> On Thu, Oct 20, 2011 at 8:07 PM, lam nguyen <lamvn08_at_gmail.com> wrote:
> > Hi all,
> > In the graphical representation I use lines as the drawing method. In my
> > system I name different segments (segname) as EVE, ODD and NEW. I want to
> > use different colors for these categories so I can tell which bond
> > (appearing as a line) belongs to which segment category. I also have
> bonds
> > between atoms of different segments and want to color them differently
> from
> > bonds on the same segments.
> > For example, I have two segments of segname NEW. One has atoms A1, A2,...
> > and the other has B1, B2, ... I color bonds between A's and bonds between
> > B's as blue. And I want bonds between A's and B's as red. If there are
> few
> > segments of segname NEW I can just create one representation for the
> whole
> > system as red, then overlap it by a set of representations in blue - one
> for
> > each segment. However there are quite many of such segments. If I use
> only
> > one representation for all segments of segname NEW, the bonds between A's
> > and B's will appear as blue. Is there any method I can use without
> creating
> > lots of representations?
>
> hard to say. it is difficult to imagine what your system
> looks like, but since your assignments seem fairly
> predictable, you could consider writing a script that will
> generate the many different individual representations.
>
> axel.
>
>
> > Thanks,
> > Lam
>
>
>
> --
> Dr. Axel Kohlmeyer
> akohlmey_at_gmail.com http://goo.gl/1wk0
>
> Institute for Computational Molecular Science
> Temple University, Philadelphia PA, USA.
>