VMD-L Mailing List

From: Remya Ann (remya.mathewskl_at_gmail.com)
Date: Sun Oct 18 2020 - 05:37:25 CDT

Hi Doa'a,
Yes I changed the color scale. But I don't have enough colorid options to
name all 50 clusters. (My cluster 1 has particle name h1 and cluster 50 has
particle name h50)
As mentioned earlier after colorid 32 i have to go back again to colorid
0...and changing the color scale of this is changing the previously
assigned colordid 0 too..

Hope I'm able to express myself clearly.

Regards,
Remya

On Sun, 18 Oct 2020, 15:43 Dr. Doa'a, <doaa.saayed_at_gmail.com> wrote:

> Hi Remya,
> Did you try changing the color scale?
> This way you can choose the intensity of the color and thus you can
> distinguish all your clusters.
>
>
>
> On Sun, 18 Oct 2020 at 11:02, Remya Ann <remya.mathewskl_at_gmail.com> wrote:
>
>> Hi thanks for the link Ashar.
>> But my problem is that there are only 33 options for colors names in the
>> repesentations->coloring method tab. Which I assign to first 33 clusters.
>> If my first cluster is assigned colorid0, then 34th cluster is again
>> assigned colorid0 and I try to adjust the colormap to vary the color. But
>> this also causes a change in the color of the first cluster as well. So is
>> there a way to create more options for the color names itself.
>>
>> It would really be helpful if some one can help me with this.
>>
>> Thanks and Regards,
>> Remya
>>
>> On Sun, 18 Oct 2020 at 08:53, Ashar Malik <asharjm_at_gmail.com> wrote:
>>
>>> Have you had a look at this:
>>>
>>>
>>> https://www.ks.uiuc.edu/Research/vmd/current/ug/node83.html#ug:topic:coloring
>>>
>>>
>>>
>>> On Sun, Oct 18, 2020 at 3:13 AM Remya Ann <remya.mathewskl_at_gmail.com>
>>> wrote:
>>>
>>>> Hi,
>>>> Is there a way to get more colors than the 32 colors mentioned in the
>>>> colors tab and representation tab in the graphics tab in VMD.
>>>> I have around 50 clusters of particles in a frame and would like to
>>>> give a different color to each cluster.
>>>> Any help would be appreciated.
>>>>
>>>> Thanks and Regards,
>>>>
>>>> --
>>>> Remya Ann Mathews K
>>>> Doctoral Scholar
>>>> Polymer Engineering and Colloid Science Lab
>>>> Department of Chemical Engineering
>>>> Indian Institute of Technology Madras
>>>> Chennai - 600 036, TamilNadu, India
>>>>
>>>>
>>
>> --
>> Remya Ann Mathews K
>> Doctoral Scholar
>> Polymer Engineering and Colloid Science Lab
>> Department of Chemical Engineering
>> Indian Institute of Technology Madras
>> Chennai - 600 036, TamilNadu, India
>>
>>
>
> --
> Doa'a
> Physical Chemistry PhD student at Tehran University
>
>