From: Peter Freddolino (
Date: Mon Apr 16 2007 - 12:48:18 CDT

Hi Atila,
for now, you can read the xbgf file in the normal vmd interface, and
then save a mol2 file using $sel writemol2 or the graphical interface.
If people would like to write mol2s straight from molefacture, this is
trivial to add to future versions.
Please let me know if this doesn't make sense.

Atila Iamarino wrote:
> Hi,
> I'm starting to use VMD and I have used the molefacture to make bonds
> and place hydrogens in my molecule. Now I want to save the xbgf file
> in mol2 butt I don't know how.