VMD-L Mailing List

From: ioana_at_pegasus.arc.nasa.gov
Date: Fri Oct 01 2004 - 20:59:35 CDT

Hi vmd users,

Maybe this is a silly question but I could not figure it out, whatever I
do it shows me all the HBonds/Dynamic Bonds of a selection.

Say I have a protein, water and ions. I ONLY want to follow from a
trajectory file the HBonds/Dynamics Bonds between protein and water
(colored in say red)
and protein and ions (colored say blue) but not the HBonds/DynamicBonds
within the
protein or between water molecules.

How can I avoid showing HBonds within a selection and only have on the
screen the HBonds between selection 1 and selection 2?

Thank you,
Ioana

******************
Ioana Cozmuta, PhD
Research Scientist
Eloret Corporation
Mail Stop 230-3
NASA AMES Research Center
Moffet Field, CA 94035-1000
Phone: (650) 604-0993
http://ipt.arc.nasa.gov/cozmuta.html