From: Baofu Qiao (
Date: Wed Oct 07 2009 - 02:21:14 CDT

Hi Young-Min,

Have you found some way to show the bonds in coarse grained model? Now I
meet the same problem.

best regards,
Baofu Qiao

> Hello.
> I am trying to represent DPPC lipids as bonds or lines. But since I am
> using Marrink's coarse grained model, it seems that vmd does not
> recognize bonding between coarse grained molecules. I am using
> Gromacs, so I have .gro, .itp, and .top files.
> How can the lipids be represented by bonds or lines using those .gro,
> .itp, or .top files? Do I need other type of files to do this?
> Thanks in advance.
> Young-Min Ban