VMD-L Mailing List
From: Baofu Qiao (qiaobf_at_gmail.com)
Date: Wed Oct 07 2009 - 02:21:14 CDT
- Next message: andrea carotti: "CatDCD Desmond Support"
- Previous message: daniel aguayo: "Re: How to generate a monolayer in VMD"
- In reply to: BAN,YOUNG MIN: "Bond representation of coarse grained molecules"
- Next in thread: Axel Kohlmeyer: "Re: Bond representation of coarse grained molecules"
- Reply: Axel Kohlmeyer: "Re: Bond representation of coarse grained molecules"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi Young-Min,
Have you found some way to show the bonds in coarse grained model? Now I
meet the same problem.
best regards,
Baofu Qiao
BAN,YOUNG MIN wrote:
> Hello.
>
> I am trying to represent DPPC lipids as bonds or lines. But since I am
> using Marrink's coarse grained model, it seems that vmd does not
> recognize bonding between coarse grained molecules. I am using
> Gromacs, so I have .gro, .itp, and .top files.
>
> How can the lipids be represented by bonds or lines using those .gro,
> .itp, or .top files? Do I need other type of files to do this?
>
> Thanks in advance.
>
> Young-Min Ban
>
>
- Next message: andrea carotti: "CatDCD Desmond Support"
- Previous message: daniel aguayo: "Re: How to generate a monolayer in VMD"
- In reply to: BAN,YOUNG MIN: "Bond representation of coarse grained molecules"
- Next in thread: Axel Kohlmeyer: "Re: Bond representation of coarse grained molecules"
- Reply: Axel Kohlmeyer: "Re: Bond representation of coarse grained molecules"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]