VMD-L Mailing List

From: Jevgenij Raskatov (jraskato_at_ucsc.edu)
Date: Wed Feb 18 2015 - 16:11:18 CST

Dear all,

I am analyzing an MD trajectory, trying to find structures that possess
specific contacts between two amino acid side chains (i.e. aspartate and
lysine). Is there a way to project a subset of structures to fulfill this
criterion from a dcd-file?

Thanks

Jevgenij 

-- 
Dr. Jevgenij A. Raskatov
Assistant Professor in Chemistry and Biochemistry
Tel.: +1-831-459-2978
Department of Chemistry and Biochemistry
Physical Science Building 356
1156 High Street
Santa Cruz, CA
95064 USA