From: Kevin Wittkowski (
Date: Thu Jun 13 2024 - 14:34:08 CDT

Dear Sir, Madam

using VMD with the graphene and nanotube tcl commands and using TopoTools and the .inp file attached, I created the structure you find in attachments.

It is constituted of 4 graphene layers and a carbon nanotube.

By inspection in VMD, the bonds created internally are correct, however, I would like to create also the bonds that wrap around the periodic box.

How can I perform this operation?

Thanks beforehand.

Best regards,

Kevin Wittkowski



ME D2 2715

1015 Lausanne