VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Mar 11 2004 - 10:16:19 CST

Hi,
  Have a look at the "betacolor_distance" script in the User's guide, you
can use that script as the basis for various types of position-based
coloring methods you might want:
  http://www.ks.uiuc.edu/Research/vmd/current/ug/node177.html#13077

VMD implements depth cueing as well, it is enabled in the
Display menu, and to change the cueing density etc you can
edit the cueing settings in the Display->Display Settings window.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Mar 11, 2004 at 06:11:40PM +0900, DongHoon Chung wrote:
> Hello..
>
> I would like to color atoms based on the distance from the specific point,
> not from the center of the molecule as POS method. And also I would like to
> make color scale or change in that method or POS method too, like GRASP
> z-depth cueing. Any suggestion will be helpful.
>
> Regards..
>
>
>
>
>
>
>
> DongHoon Chung Ph.D
>
>
>
> Department of microbiology
>
> College of Med. Korea University.
>
> -------------------------------------------
>
> It is a question that drives us................in The Matrix
>
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
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