VMD-L Mailing List

From: Liel Sapir (lielsapir_at_gmail.com)
Date: Wed Dec 15 2021 - 03:04:01 CST

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Hi,

I save lammps data files through writelammpsdata with TopoTools.
Will a different file format prevent the problem?

Thanks,

Liel

On Mon, Dec 13, 2021 at 5:42 PM Jérôme Hénin <jerome.henin_at_ibpc.fr> wrote:

> Hi,
>
> What file format are you saving the coordinates in?
>
> Jerome
>
> ----- On 13 Déc 21, at 15:46, Liel Sapir <lielsapir_at_gmail.com> wrote:
>
> Hello,
> I am trying to use vmd to edit a coordinate file but removing some atoms.
> My problem is that once I save the new coordinates to a new file all the
> atom indices are automatically reassigned. Is there a way to avoid this
> within vmd?
>
> Thank you,
>
> Liel
>
>

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