From: Toni Giorgino (
Date: Tue Jul 13 2010 - 14:09:49 CDT

Dear VMD users,

I've recently extended the RMSD trajectory tool by Luis Gracia (et al) in
order to compute a variety of metrics based on the number of native
contacts. If you are interested, feel free to check out instructions, a
screenshot and code at

Feedback is welcome, of course.


Toni Giorgino, PhD - - fax +39 0382 1850209
Post-doctoral research fellow -
Computational Biochemistry and Biophysics Lab (GRIB-IMIM)
Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)
C/ Doctor Aiguader 88, 08003 Barcelona, Spain