VMD-L Mailing List

From: Simon Dürr (simon.duerr_at_uni-konstanz.de)
Date: Fri Mar 30 2018 - 04:56:50 CDT

I have this protein structure that is not correctly rendering the ribbon or
Cartoon representations.
The pdb code is 1O82

VMD recognizes it as protein and can display secondary structure in the
terminal but the graphics is not rendered.
I have noticed that in the structure some of the helical residues are not
modelled. Maybe this is the result of the bug?
I have seen in the bug list that there are problems rendering cyclic
peptides but afaik this should not be cyclic.

[atomselect top "protein and chain A"] get structure
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H C C C C C C C C C C C C C C C C C C C H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H C C C C C C C
C C C C C C C C C C C C C C C H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H C C C C H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H T T T T T T T T T T T T T T T T T T T T T T T T C C C C C C H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H C C C C H H H H H H H
H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H H
H H H H H H H H H H H H H H

Best,
Simon