VMD-L Mailing List

From: Lee, Sangbae (salee_at_coh.org)
Date: Thu Aug 29 2013 - 13:12:21 CDT

Hi, VMD.
Now, I'm trying to analyze anton trajectories (converted to dcd file).
Using tcl command like "pbc wrap -centersel "protein" -center com -compound res -all",
I have good shape in first initial structure and final frame, but there are still clashed pbc shapes within several frame structures.
Could you let me know where I made a mistake?

Thanks
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Sangbae Lee
Research Fellow
Beckman Research Institute of The City of Hope
1500 Duarte Rd
Duarte, CA 91010
Cell> (352) 871-3073
Work> (626) 329-8111, x60618
E-mail> salee_at_coh.org or sblee11_at_gmail.com
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