VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Oct 17 2000 - 11:42:30 CDT

Hi,
  You can use "same residue as" along with the rest of that selection
to get the whole residues rather than just part of them.

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Oct 17, 2000 at 12:31:12PM -0400, Deepak Singh wrote:
> oops my fault,
>
> When I tried that earlier that, I got a bunch of PHE's and what appeared
> to be other residues (I am doing this grayscale), but what looked like a
> gly,s and Leu's are actually fragments from PHE. Is there anyway I can
> get the complete PHE residue displayed? I am getting parts of some
> residues, but not the entire residue (this has always been a problem with
> the "within" keyword)
>
> Thanks
>
> Deepak.
>
> Sergei Izrailev wrote:
>
> > Hello,
> >
> > resname PHE and (within 5 of resid 105)
> >
> > should do it.
> >
> > Sincerely,
> >
> > Sergei
> >
> > Deepak Singh wrote:
> > > I want to
> > > select all phenylalanines with 5 Angstroms of resid 205 and no other
> > > residues in that range.
>
> --
> **********************************************************************
> Deepak Singh Tel : (315)443 1739 (w)
> Graduate Student (315)472 9659 (h)
> Dept. of Chemistry Fax : (315)443 4070
> Syracuse University email : desingh_at_syr.edu
> 1-014 CST, Syracuse URL : http://web.syr.edu/~desingh
> NY 13244
>
> "Violence is the last refuge of the incompetent." --- Salvor Hardin
> **********************************************************************
>
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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