VMD-L Mailing List

From: Vasumathi Velachi (vas_at_fc.up.pt)
Date: Fri Jun 13 2014 - 04:28:16 CDT

Dear Rui
Thank you very much, now it is working well.

Regards
Vasumathi 

---
Vasumathi Velachi
Em 2014-06-12 18:36, Joaquim Rui de Castro Rodrigues escreveu:
> Hi,
>
> You are calling vmd in text mode; remove "-dispdev text"  from your
> command and try again.
>
> Hope this helps,
> Rui
>
>
> ________________________________________
> De: owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] Em Nome De
> Vasumathi Velachi [vas_at_fc.up.pt]
> Enviado: quinta-feira, 12 de Junho de 2014 17:33
> Para: vmd-l_at_ks.uiuc.edu
> Assunto: vmd-l: Viewing SASA points through draw command-problem
>
> Dear All
> I have used the point flag to store the samples into a variable and
> used the draw command to view the points.
> Please find the script which i used for the above
> .....
> set pro [atomselect top "protein"]
> set lys [atomselect top "resname LYS"]
> set sasa [measure sasa 1.4 $pro -points pts -restrict $lys]
> puts "The SASA is $sasa"
> foreach pt $pts {
> draw point $pt
> }
>
> I used the following command to execute the above script
> vmd -dispdev text filename.pdb -e sasa.tcl
>   It prints the sasa value but not showing any plot to see the area.
> Did I missed anything?
>
> Thanking you in advance
>
> --
> Vasumathi Velachi