From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Oct 07 2008 - 13:20:12 CDT

Hi,
  I may be mistaken, but I don't recall MultiSeq having a
pairwise RMSD using STAMP. It may be possible to implement
one, but I don't recall that being a built-in feature. I'm
CCing the main MultiSeq developers in case they wish to
comment on this further.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Oct 03, 2008 at 08:10:16AM -0700, Dong Xu wrote:
> Hi,
>
> How do I calculate pairwise RMSD on a set of PDBs in which the
> proteins have slight different number of atoms? I aligned them using
> MultiSeq Stamp structural alignment, but couldn't figure out the
> pairwise RMSD. I thought it used to be in MultiSeq, but not anymore?
>
> Thanks,
>
> -DX

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