VMD-L Mailing List

From: Dong Xu (d1xu_at_ucsd.edu)
Date: Fri Oct 03 2008 - 10:10:16 CDT

Hi,

How do I calculate pairwise RMSD on a set of PDBs in which the
proteins have slight different number of atoms? I aligned them using
MultiSeq Stamp structural alignment, but couldn't figure out the
pairwise RMSD. I thought it used to be in MultiSeq, but not anymore?

Thanks,

-DX