VMD-L Mailing List

From: Bjoern Olausson (namdlist_at_googlemail.com)
Date: Fri Nov 25 2011 - 05:36:26 CST

On Friday 25 November 2011 12:05:32 Ajasja Ljubetič wrote:
> Hi,
>
Hej Ajasja,

thanks for your reply!

> It may not be hanged, perhaps it's just restoring the colors (from
> line 2727 on).
> If you didn't modify the colors, I think you can safely delete lines 2583
> to 174883.
>
Indeed... it was restoring the colors... I never thought it would take that
much time.

I didn't change the color, so why is VMD including this at all?

> Also, the Invalid repid specified:X Meseges seem a bit suspicious.
>
I have no clue why this pops up... but it seems to be negligible.

> Best regards,
> Ajasja
>
Cheers,
Bjoern

> On Fri, Nov 25, 2011 at 07:51, Bjoern Olausson
<namdlist_at_googlemail.com>wrote:
> > Hi,
> >
> > I generated some representations via a script and saved the view with
> > "save_state" command.
> >
> > When i load this state file, VMD reads it, does everything what I expect
> > it to
> > do, shows the final representation as expected, but then VMD is
> > unresponsive
> > has 100% CPU usage and all VMD related window, except the cmd, are
> > neither updated nor usable. I have to kill the VMD process..
> >
> > I am running VMD 1.9 on Linux 3.0.6 with 8GB RAM, a GeForce 8600 GT and a
> > Core2 Quad CPU Q9300 - composing is disabled for KDE.
> >
> > You can find the state file here:
> > http://paste.pocoo.org/show/512658/
> >
> > An here's the output of VMD when reading this file (vmd -e statfile.vmd):
> > http://paste.pocoo.org/show/512659/
> >
> > Any ideas?
> >
> > Cheers,
> > Bjoern
> >
> > --
> > Bjoern Olausson
> > Martin-Luther-Universität Halle-Wittenberg
> > Institut für Pharmazie
> > Wolfgang-Langenbeck-Str.4
> > 06120 Halle/Saale
> >
> > Phone: +49-345-55-25122 

-- 
Bjoern Olausson
Martin-Luther-Universität Halle-Wittenberg 
Institut für Pharmazie
Wolfgang-Langenbeck-Str.4
06120 Halle/Saale
Phone: +49-345-55-25122