From: Leandro Martínez (leandromartinez98_at_gmail.com)
Date: Thu Sep 25 2008 - 14:51:00 CDT

Hi Ananyo,
You probably want to wrap your coordinates, use
the PBCtools for that:

http://www.ks.uiuc.edu/Research/vmd/plugins/pbctools/

Leandro.

On Thu, Sep 25, 2008 at 3:29 PM, Ananyo Bandyopadhyay <abandyop_at_mtu.edu>wrote:

> Hi all
>
> Can somebody guide me of how to make a cuboid box in VMD? I am making
> amorphous polymers with periodic boundary conditions (20 angstroms length
> along each axis) but when I am seeing the molecules in VMD, the box does not
> show up. I want the box so that the molecules appear to be inside a box of
> finite volume and not just scattered in space.
>
> Thanks and regards
> Ananyo.
>
> PhD student
> Department of Materials Sciences and Engineering
> Michigan Technological University
>
>