From: Axel Kohlmeyer (
Date: Sun Feb 12 2012 - 09:47:21 CST

On Sun, Feb 12, 2012 at 6:25 AM, Albert <> wrote:
> Hello:
>   I am trying to run PROPKA in VMD-1.9.1 and it doesn't work. when I click
> run , it only said in terminal:

"it doesn't work" is almost always an insufficient
description of a problem.

> PropKa GUI Reference) predicted using PROPKA. BMC Bioinformatics. 2011,11:6
> PROPKA Called
> but no files generated...

please note, that VMD contains just a GUI and not the executable.
what you describe sounds, like you didn't install the latter or
didn't install it the way the plugin expects it.



Dr. Axel Kohlmeyer
College of Science and Technology
Temple University, Philadelphia PA, USA.