VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Tue Jul 17 2012 - 14:27:39 CDT

On Tue, Jul 17, 2012 at 8:10 PM, Fatemesadat Emami <fe2_at_zips.uakron.edu> wrote:
> Dear vmd users,
> I have simulated a surface (infinite with periodic bonds) with namd. When I
> visualize it in vmd the bonds over the boundaries are shown. Is there any
> way to not visualize the periodic bonds to have a cleaner visualization?

how about generating a custom .psf file
that is missing these bonds
only for visualization purposes?

axel

> Thanks
> FSE
>
> --
> Yours Sincerely,
> Fateme Sadat Emami
> Nano Scale Laboratory
> Polymer Engineering Department
> The University of Akron 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
International Centre for Theoretical Physics, Trieste. Italy.