VMD-L Mailing List

From: ban arn (ban.arn_at_gmail.com)
Date: Thu May 19 2011 - 11:37:40 CDT

Dear VMD users

Thnaks for reply.

It works fine.

I can pose the question in another way.

Is it possible to align the trajectories of two proteins of varying atom
numbers according to backbone in VMD.

Many Thanks
Balaji

On Thu, May 19, 2011 at 5:31 PM, Joseph Bylund <joseph.bylund_at_gmail.com>wrote:

> The stamp structural alignment in extensions->analysis->multiseq sounds
> like what you're looking for.
>
>
> On 05/19/2011 11:43 AM, ban arn wrote:
>
>> Dear VMD users
>>
>> Is it possible to align two proteins of varying atom numbers according to
>> backbone in vmd.
>>
>> Kindly advice
>>
>> Many Thanks
>> Balaji
>>
>>