VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Feb 16 2009 - 00:27:26 CST

Hi,
  What version of VMD are you using, and on what platform?
This error could indicate one of several potential issues,
but to start out with I need more information.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sun, Feb 15, 2009 at 09:54:52PM -0800, BIN ZHANG wrote:
> Dear all:
>
> I was trying to use the drawing method "MSMS", but got the following
> error :
>
> ==============================
> Compilation flags -O3 -DVERBOSE -DTIMING -DFUNCPROTO -
> force_cpusubtype_ALL
> INPUT /tmp/vmdmsms.u501.991 116426 spheres 0 collision only, radii
> 1.000 to 2.270
> PARAM Probe_radius 1.500 density 1.500 hdensity 3.000
> REDUCED SURFACE ...
> RS component 0 identified 10399 15337 31589
> 0 free edge(s) found in component 0
> RS component #faces #edges #free_edges #vertices genus
> 0 24744 37116 0 11468 453
> Time Reduced Surface real: 2.89 user: 2.70 sys: 0.04
> ANALYTICAL SOLVENT EXCLUDED SURFACE...
> Component 0
> Time Surface real: 0.38 user: 0.32 sys: 0.03
> ERROR) Cannot read MSMS facet file: /tmp/vmdmsms.u501.991.face
> Info) Could not compute MSMS surface
> Info) Done with MSMS surface.
> ==============================
>
> Can someone explain to me what's wrong with it?
> I ran the test example came with the binary, and it worked just fine.
>
> Thanks,
> Bin
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078