VMD-L Mailing List

From: Georcki Ropon (groponp_at_gmail.com)
Date: Wed Nov 17 2021 - 20:18:09 CST

There is pathway to renumber it, with tcl?

Best,

Geo.

> On Nov 17, 2021, at 21:14, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:
>
> You cannot change the "serial" property. It is "index + 1" and both are read-only.
>
> On Wed, Nov 17, 2021 at 8:37 PM Georcki Ropon <groponp_at_gmail.com <mailto:groponp_at_gmail.com>> wrote:
> Dear user,
>
> I want change serial atom number , my number start with 3000 but I want all number (para chain B) start 1 2 3 4 ….
>
> Bellow my code but not fix it.
>
> mol new prot_orient_add_ter.pdb
>
> set prob [atomselect top "segid PROB"]
>
> set serials [$prob get serial]
>
> set count 0
> foreach atom $serials {
> $prob set serial $count
> incr $count
>
> }
>
> set all [atomselect top all]
> $all writepdb renum.pdb
> quit
>
>
> --
> Dr. Axel Kohlmeyer akohlmey_at_gmail.com <mailto:akohlmey_at_gmail.com> https://urldefense.com/v3/__http://goo.gl/1wk0__;!!DZ3fjg!swL2LpFEIPzjT_0sgFcmxxbnHEEKDENQlqLP-zn3GBRW252IVQo-iMpmqzXD8b9aIw$ <https://urldefense.com/v3/__http://goo.gl/1wk0__;!!DZ3fjg!swL2LpFEIPzjT_0sgFcmxxbnHEEKDENQlqLP-zn3GBRW252IVQo-iMpmqzXD8b9aIw$ >
> College of Science & Technology, Temple University, Philadelphia PA, USA
> International Centre for Theoretical Physics, Trieste. Italy.