VMD-L Mailing List

From: snoze pa (snoze.pa_at_gmail.com)
Date: Mon May 05 2008 - 15:03:07 CDT

Dear NAMD users,
 I am using vmd to calculate the rmsd from my simulation. I have a
question related to rmsd calculations. what is the rmsd values! Is it
relative to minimized protein structure or to the original crystal
structure? Thank you very much for your suggestions.
s