VMD-L Mailing List

From: Mr Bernard Ramos (bgrquantum_at_yahoo.com)
Date: Wed Jul 06 2011 - 14:13:05 CDT

Hi everyone!
 
I am very new with VMD. I need to know how I can retrieve the Cremer-Pople ring puckering parameters of a disaccharide (two pyranose sugar monomers linked together) every timeframe of my trajectory. Any help is greatly appreciated.
 
I believe for a ring with size=6, we have three parameters. Thanks.
 
Pls help,
 
Bernard