VMD-L Mailing List

From: bora erdemli (boraerdemli_at_yahoo.com)
Date: Thu Sep 30 2004 - 08:00:18 CDT

Hi,

I have tried what you suggested but unfortunately it
did not work. Do you have any other suggestion?

could it be because of my files?

best regards

--- Anna Modzelewska <amodzelewska_at_iimcb.gov.pl>
wrote:

> Bora,
> we had a similar problem with VMD1.8.2 on WindowsXP.
> It didn't add water and
> ions, probably this version of psfgen works
> uncorrectly. We moved the
> "autoionize" script from VMD1.8.2 to VMD1.8.1 and
> it works. You may also
> try to replace the psfgen in VMD1.8.2 by an older
> version of this plugin.
> Good luck
> Anna
>
>
> ----- Original Message -----
> From: "bora erdemli" <boraerdemli_at_yahoo.com>
> To: "John Stone" <johns_at_ks.uiuc.edu>
> Cc: <vmd-l_at_ks.uiuc.edu>
> Sent: Thursday, September 30, 2004 8:38 AM
> Subject: Re: vmd-l: problem in autoionize
>
>
> >
> >
> >
> > John,
> >
> > I have tried it both on Linux machine(version
> LINUX
> > OpenGL ,Linux with Mesa or hardware OpenGL) and
> > Windows version(Windows OpenGL ,Microsoft Windows
> > 2000/XP using OpenGL). However, I came across
> with
> > the same problem. Could it be because of my psf
> and
> > pdb file that I generate by using psfgen?
> >
> > thank you in advance
> >
> >
> >
> >
> >
> >
> >
> > __________________________________
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>

                
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