VMD-L Mailing List

From: Joel Subach (mjsubach_at_alumni.ncsu.edu)
Date: Mon Sep 11 2023 - 10:06:31 CDT

Hello Josh thank you for your kind update:) and I believe that
representation --> dynamic bond does not exhibit the bonding via
hyphen-lines.

On Mon, Sep 11, 2023 at 4:00 PM Vermaas, Josh <vermaasj_at_msu.edu> wrote:

> Have you looked at the dynamic bond representation?
>
>
>
> -Josh
>
>
>
> *From: *<owner-vmd-l_at_ks.uiuc.edu> on behalf of Joel Subach <
> mjsubach_at_alumni.ncsu.edu>
> *Date: *Sunday, September 10, 2023 at 9:36 AM
> *To: *"vmd-l_at_ks.uiuc.edu" <vmd-l_at_ks.uiuc.edu>
> *Subject: *vmd-l: Viewing Van der Waals bonds of a protein ligand in
> complex inquiry
>
>
>
> Hello, does VMD contain an algorithm to view possible Van der Waals bonds
>
> between a protein and ligand via a click or must each be measured manually?
>
> If the latter, what would be the best procedure to do this?
>
>
>
> Thanks:)
>
> Joel 🚀
>