From: Nuno R. L. Ferreira (
Date: Thu Apr 14 2005 - 03:29:03 CDT

If I'm not mistaken, under vmd scripts section, there's a script that creates a coloured map for a given structure of CA-CA distances (ca-dist). One of the authors is J. Stone. You could start from there.

Also, any script that calculates contacts between atoms/residues, have the script lines needed.

Best regards,

  ----- Original Message -----
  From: Michel Espinoza-Fonseca
  Sent: Thursday, April 14, 2005 12:31 AM
  Subject: vmd-l: CA-CA distances in a trayectory

  Hi all,


  I have a very tiny question. Does anybody know how to calculate the CA-CA distances between two different residues on a trajectory? I'm trying to figure out how to do it, but I don't find the way. All comments are welcome!