From: Lai, Jonathan (
Date: Fri Jul 10 2015 - 11:39:26 CDT

Dear Jinasena,

If you just want to view the sequence, there is a simple viewer under VMD->Extensions called "Sequence Viewer". Alternatively, you can also use VMD->Extensions->Analysis->Multiseq to view the Sequence.

From: [] on behalf of Jinasena Hewage []
Sent: Friday, July 10, 2015 10:45 AM
To: Vmd l
Subject: vmd-l: Primary structure,

I have a secondary structure (apha-helix) obtained from a protein data base. I want to convert it to a primary (liner structure).
Is there way of doing it in VMD or by using a tcl script.


Dr. Jinasena Hewage
Senior Lecturer  in Physical Chemistry
(Current Position: Visiting Academic, Research School of Chemistry, Australian National University)
Department of Chemistry
University of Ruhuna
Matara, Sri Lanka
(+94) 071 4500 389