VMD-L Mailing List
From: Alicia Hopkins (hopkins_at_magnet.fsu.edu)
Date: Sun Sep 19 2004 - 08:42:12 CDT
- Next message: Marcos Sotomayor: "Re: measuring h-bonds"
- Previous message: Oleg V. Stroganov: "MSMS under Windows"
- Next in thread: Marcos Sotomayor: "Re: measuring h-bonds"
- Reply: Marcos Sotomayor: "Re: measuring h-bonds"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
On a windows box (using 1C3W.pdb as the protein model)
I use the following commands:
vmd> set reference_sel [atomselect 0 all]
atomselect 0
vmd> set cutoff 5
5
vmd> set angle 45
45
vmd> set hblist [measure hbonds $cutoff $angle $reference_sel]
{} {} {}
is my result. Previously, I was trying this on my Linux, and I was
receiving the same result, any ideas?
Cheers,
Alicia C. Hopkins
CIMAR / National High Magnetic Field Laboratory
1800 East Paul Dirac Drive
Tallahassee, Florida 32310
Phone: 850-644-1309
Fax: 850-644-1366
ahopkins_at_chem.fsu.edu
- Next message: Marcos Sotomayor: "Re: measuring h-bonds"
- Previous message: Oleg V. Stroganov: "MSMS under Windows"
- Next in thread: Marcos Sotomayor: "Re: measuring h-bonds"
- Reply: Marcos Sotomayor: "Re: measuring h-bonds"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]