VMD-L Mailing List

From: Yang, Shaorui (syang45_at_gatech.edu)
Date: Sun Feb 22 2009 - 22:42:19 CST

I want to color the atoms of a metal nanowire by the coordination number
of atoms to see the presence of some defects like dislocations. I can use
LAMMPS to compute the coordination #s of each atom and dump them into the
trajectory file. But the problem is how can I let VMD to identify the
LAMMPS trajectory file with a different format with the default setting. I
would appreciate if anyone can give me some suggestion on how to do that.
Thank you all.

 

Regards

Shaorui Yang