VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Thu Apr 16 2009 - 22:11:12 CDT

On Thu, 2009-04-16 at 19:35 -0700, Samuel Coulbourn Flores 花山 wrote:
> Hi Guys,

sam,

please don't cross-post VMD questions to NAMD-l or random people.

thanks.

> I wonder -- is it possible to display all frames of an ensemble,
> instead of "playing" them as a movie? I have each conformation

yes. check out the "Draw Multiple Frames" field in the Trajectory
Tab of the Graphical Representation dialog.

http://www.ks.uiuc.edu/Research/vmd/current/ug/node40.html#SECTION00747300000000000000

say, you have ten models, then you can enter 0:9:1
and you should see all ten.

> separated with MODEL and ENDMDL tags in a PDB formatted file. I want
> to generate a picture of the conformational variability of my
> molecule. Please let me know how to do this if it is possible.

BTW: this has been discussed on VMD-l several times and is
well documented. ;-)

cheers,
   axel.

>
>
> Many thanks
>
>
> Sam
>
> Samuel Coulbourn Flores, PhD
> Altman Lab
> Department of BioEngineering
> Stanford University
> samuel.flores_at_aya.yale.edu
> 650.644.8416
>
>
> 花山
> 科学者
> 生物工学部
> スタンフォ一ド大学
> スタンフォ一ド、カリフォルニア、米国
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-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
=======================================================================
If you make something idiot-proof, the universe creates a better idiot.