VMD-L Mailing List

From: Super Sayan (superbenji83_at_yahoo.it)
Date: Wed Mar 29 2006 - 11:49:12 CST

Hi, my distribution is "debian-testing" (i downloaded
it 3 days ago). i'm using gnome
if i type:"vmd -dispdev text", in the shell appear:
"/usr/local/lib/vmd/vmd_LINUX: error while loading
shared libraries: libstdc++.so.5: cannot open shared
object file: No such file or directory"
%%%%%%%%%%%%%
benji_at_beniamino:~/vmd/lib/vmd$ ls
Announcement LICENSE README shaders
surf_LINUX vmd_LINUX
doc plugins scripts stride_LINUX
tachyon_LINUX
benji_at_beniamino:~/vmd/lib/vmd$ vmd_LINUX
bash: vmd_LINUX: command not found
benji_at_beniamino:~/vmd/lib/vmd$ ./vmd_LINUX
./vmd_LINUX: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No
such file or directory
benji_at_beniamino:~/vmd/lib/vmd$
%%%%%%%%%%%%%%%%

about glxinfo:
benji_at_beniamino:~/vmd/lib/vmd$ glxinfo
name of display: :0.0
display: :0 screen: 0
direct rendering: No
server glx vendor string: SGI
server glx version string: 1.2
server glx extensions:
    GLX_ARB_multisample, GLX_EXT_visual_info,
GLX_EXT_visual_rating,
    GLX_EXT_import_context, GLX_OML_swap_method,
GLX_SGI_make_current_read,
    GLX_SGIS_multisample, GLX_SGIX_hyperpipe,
GLX_SGIX_swap_barrier,
    GLX_SGIX_fbconfig
client glx vendor string: SGI
client glx version string: 1.4
client glx extensions:
    GLX_ARB_get_proc_address, GLX_ARB_multisample,
GLX_EXT_import_context,
    GLX_EXT_visual_info, GLX_EXT_visual_rating,
GLX_MESA_allocate_memory,
    GLX_MESA_swap_control, GLX_MESA_swap_frame_usage,
GLX_OML_swap_method,
    GLX_OML_sync_control, GLX_SGI_make_current_read,
GLX_SGI_swap_control,
    GLX_SGI_video_sync, GLX_SGIS_multisample,
GLX_SGIX_fbconfig,
    GLX_SGIX_pbuffer, GLX_SGIX_visual_select_group
GLX extensions:
    GLX_ARB_get_proc_address, GLX_ARB_multisample,
GLX_EXT_import_context,
    GLX_EXT_visual_info, GLX_EXT_visual_rating,
GLX_OML_swap_method,
    GLX_SGI_make_current_read, GLX_SGIS_multisample,
GLX_SGIX_fbconfig,
    GLX_SGIX_visual_select_group
OpenGL vendor string: Mesa project: www.mesa3d.org
OpenGL renderer string: Mesa GLX Indirect
OpenGL version string: 1.2 (1.5 Mesa 6.4.1)
OpenGL extensions:
    GL_ARB_depth_texture, GL_ARB_imaging,
GL_ARB_multitexture,
    GL_ARB_point_parameters, GL_ARB_point_sprite,
GL_ARB_shadow,
    GL_ARB_shadow_ambient,
GL_ARB_texture_border_clamp,
    GL_ARB_texture_cube_map, GL_ARB_texture_env_add,
    GL_ARB_texture_env_combine,
GL_ARB_texture_env_crossbar,
    GL_ARB_texture_env_dot3,
GL_ARB_texture_mirrored_repeat,
    GL_ARB_texture_rectangle, GL_ARB_transpose_matrix,
GL_ARB_window_pos,
    GL_EXT_abgr, GL_EXT_bgra, GL_EXT_blend_color,
GL_EXT_blend_func_separate,
    GL_EXT_blend_logic_op, GL_EXT_blend_minmax,
GL_EXT_blend_subtract,
    GL_EXT_clip_volume_hint, GL_EXT_copy_texture,
GL_EXT_draw_range_elements,
    GL_EXT_fog_coord, GL_EXT_multi_draw_arrays,
GL_EXT_packed_pixels,
    GL_EXT_point_parameters, GL_EXT_polygon_offset,
GL_EXT_rescale_normal,
    GL_EXT_secondary_color,
GL_EXT_separate_specular_color,
    GL_EXT_shadow_funcs, GL_EXT_stencil_two_side,
GL_EXT_stencil_wrap,
    GL_EXT_subtexture, GL_EXT_texture,
GL_EXT_texture3D,
    GL_EXT_texture_edge_clamp, GL_EXT_texture_env_add,
    GL_EXT_texture_env_combine,
GL_EXT_texture_env_dot3,
    GL_EXT_texture_lod_bias, GL_EXT_texture_object,
GL_EXT_texture_rectangle,
    GL_EXT_vertex_array, GL_APPLE_packed_pixels,
GL_ATI_texture_env_combine3,
    GL_ATI_texture_mirror_once,
GL_ATIX_texture_env_combine3,
    GL_HP_occlusion_test,
GL_IBM_texture_mirrored_repeat,
    GL_INGR_blend_func_separate, GL_MESA_pack_invert,
GL_MESA_ycbcr_texture,
    GL_NV_blend_square, GL_NV_point_sprite,
GL_NV_texgen_reflection,
    GL_NV_texture_rectangle, GL_SGIS_generate_mipmap,
    GL_SGIS_texture_border_clamp,
GL_SGIS_texture_edge_clamp,
    GL_SGIS_texture_lod, GL_SGIX_depth_texture,
GL_SGIX_shadow,
    GL_SGIX_shadow_ambient, GL_SUN_multi_draw_arrays
glu version: 1.3
glu extensions:
    GLU_EXT_nurbs_tessellator,
GLU_EXT_object_space_tess

   visual x bf lv rg d st colorbuffer ax dp st
accumbuffer ms cav
 id dep cl sp sz l ci b ro r g b a bf th cl r g
 b a ns b eat
----------------------------------------------------------------------
0x23 24 tc 0 24 0 r y . 8 8 8 0 0 16 0 0 0
 0 0 0 0 None
0x24 24 tc 0 24 0 r y . 8 8 8 0 0 16 8 16 16
16 0 0 0 None
0x25 24 tc 0 32 0 r y . 8 8 8 8 0 16 8 16 16
16 16 0 0 None
0x26 24 tc 0 32 0 r . . 8 8 8 8 0 16 8 16 16
16 16 0 0 None
0x27 24 dc 0 24 0 r y . 8 8 8 0 0 16 0 0 0
 0 0 0 0 None
0x28 24 dc 0 24 0 r y . 8 8 8 0 0 16 8 16 16
16 0 0 0 None
0x29 24 dc 0 32 0 r y . 8 8 8 8 0 16 8 16 16
16 16 0 0 None
0x2a 24 dc 0 32 0 r . . 8 8 8 8 0 16 8 16 16
16 16 0 0 None
benji_at_beniamino:~/vmd/lib/vmd$
%%%%%%%%%%%%%%%%
if i type "xterm" it opens another shell.
thanks.
bye

--- John Stone <johns_at_ks.uiuc.edu> ha scritto:

>
> Hi,
> This is probably one of the common Linux problems.
> Which Linux distribution are you running?
>
> What happens if you do:
> vmd -dispdev text
>
> What output do you get when you run this command:
> ldd /home/benji/vmd/lib/vmd_LINUX
>
> Did you try running 'xterm' and 'glxinfo' as I
> suggested?
>
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Mar 29, 2006 at 08:41:43AM +0200, Super
> Sayan wrote:
> > I reinstalled vmd as user (not root); i installed
> it
> > in directory "/home/benji/vmd".
> > it doesn't work: there are the same problem:
> > if i go in vmd's dir and i type "vmd" as user, it
> > starts and go off, without any error printed in
> the
> > shell (it prints "[1] 6853" but the number always
> > changes).
> > if i type "vmd" as root, it starts ang go off,
> > printing in the shell: "Warning: Tried to connect
> to
> > session manager, Authentication Rejected, reason :
> > None of the authentication protocols specified are
> > supported and host-based authentication failed".
> in
> > the shell it also prints "[1] 6933" changing
> always
> > the number.
> > thanks anymore.
> > Beniamino
> >
> >
> >
> > --- John Stone <johns_at_ks.uiuc.edu> ha scritto:
> >
> > >
> > > Hi,
> > > This sounds like some sort of X issue. If you
> are
> > > logged in as a different
> > > user than root, then su'd and installed VMD, but
> ran
> > > VMD as root, this might
> > > lead to the problem you just had. You'll need
> to
> > > run VMD as the same user
> > > that you've logged into the machine with, since
> X
> > > won't allow windows
> > > to be created by other users. You can test this
> by
> > > running "xterm"
> > > or "glxinfo" to verify that you've got access to
> the
> > > display as the
> > > user you're trying to run VMD with. In general,
> > > when installing VMD on
> > > Unix, follow the instructions in the provided
> > > README, as that explains
> > > how the VMD configure script works.
> > >
> > > John Stone
> > > vmd_at_ks.uiuc.edu
> > >
> > > On Tue, Mar 28, 2006 at 09:44:37PM +0200,
> Beniamino
> > > Sciacca wrote:
> > > > Hi!
> > > > i installed gromacs on my centrino duo without
> > > problem.
> > > > i installed also VMD; when i typed
> "./configure"
> > > it says: "...
> > > > ./configure.options".
> > > > so i typed: "./configure LINUX".
> > > > later i typed make install.
> > > > so if i move to the directory where it is
> > > installed, and i type "vmd",
> > > > it starts and go off immediately.
> > > > in the shell it writes: "... authentication
> > > failed........".
> > > > what's the problem? is it an installation
> problem?
> > > > thanks, community, for your answers.
> > > > bye
> > > > Beniamino (superbenji83_at_yahoo.it)
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > ___________________________________
> > > > Yahoo! Mail: gratis 1GB per i messaggi e
> allegati
> > > da 10MB
> > > > http://mail.yahoo.it
> > >
> > > --
> > > NIH Resource for Macromolecular Modeling and
> > > Bioinformatics
> > > Beckman Institute for Advanced Science and
> > > Technology
> > > University of Illinois, 405 N. Mathews Ave,
> Urbana,
> > > IL 61801
> > > Email: johns_at_ks.uiuc.edu Phone:
> > > 217-244-3349
> > > WWW: http://www.ks.uiuc.edu/~johns/ Fax:
> > > 217-244-6078
> > >
> >
> >
> >
> >
> >
> >
> >
> > ___________________________________
> > Yahoo! Mail: gratis 1GB per i messaggi e allegati
> da 10MB
> > http://mail.yahoo.it
>
> --
> NIH Resource for Macromolecular Modeling and
> Bioinformatics
> Beckman Institute for Advanced Science and
> Technology
> University of Illinois, 405 N. Mathews Ave, Urbana,
> IL 61801
> Email: johns_at_ks.uiuc.edu Phone:
> 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax:
> 217-244-6078
>

        

        
                
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