From: Axel Kohlmeyer (
Date: Fri Dec 07 2007 - 09:20:28 CST

hi michel,

did you check out the VMD script library?
looks pretty close to what you are looking for.


On Dec 7, 2007 9:30 AM, L. Michel Espinoza-Fonseca
<> wrote:
> Hi all,
> I have a NAMD-generated trajectory of the unbinding of a peptide from
> a protein. I was wondering if there is any way to draw the trajectory
> of the COM of either the peptide or a selected sidechain using VMD
> (for example, by creating a path of dummy atoms). All comments will be
> highly appreciated.
> Thanks!
> Michel

Axel Kohlmeyer
  Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
If you make something idiot-proof, the universe creates a better idiot.