VMD-L Mailing List

From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Fri Dec 07 2007 - 08:30:04 CST

Hi all,

I have a NAMD-generated trajectory of the unbinding of a peptide from
a protein. I was wondering if there is any way to draw the trajectory
of the COM of either the peptide or a selected sidechain using VMD
(for example, by creating a path of dummy atoms). All comments will be
highly appreciated.

Thanks!
Michel