VMD-L Mailing List

From: Jerome Henin (jhenin_at_cmm.chem.upenn.edu)
Date: Mon Feb 26 2007 - 19:32:29 CST

Hi,
Did you try a recent beta version?
Jerome

On Monday 26 February 2007 17:24, Nichols A. Romero wrote:
> Hi,
>
> I am reporting a bug in VMD 1.8.5. I am running RHEL on an Intel 32-bit
> system. I also have nVIDIA video card
> but I don't believe any of these details are relevant since I can reproduce
> this problem on SGI Altix (IA64)
> system as well which is quite different from my desktop machine.
>
> I am simply loading a Trajectory in DCD format and then trying to export
> the coordinates to ANY format, e.g.
> xyz, POSCAR, etc. I have run with the debug option and this is what I get.
>
> (gdb) where
> #0 0x0051b600 in strncpy () from /lib/tls/libc.so.6
> #1 0x08142465 in MolFilePlugin::write_structure ()
> #2 0x081020c7 in CoorPluginData::CoorPluginData ()
> #3 0x0817219a in VMDApp::molecule_savetrajectory ()
> #4 0x081b7186 in SaveTrajectoryFltkMenu::do_save ()
> #5 0x083bde7c in Fl_Button::handle ()
> #6 0x083ba310 in fl_throw_focus ()
> #7 0x083ba402 in Fl::handle ()
> #8 0x083cd057 in fl_handle ()
> #9 0x083cc66e in Fl::remove_fd ()
> #10 0x083cc890 in fl_wait ()
> #11 0x083b9bb6 in Fl::wait ()
> #12 0x0816e1fd in VMDApp::VMDupdate ()
> #13 0x08184857 in main ()